LOCUS MNKHAPSE 7143 bp ds-DNA PRI 09-NOV-1992 DEFINITION A.geoffroyi (spider monkey) eta-globin pseudogene, complete cds. ACCESSION J03050 KEYWORDS Alu repeat; LINE repetitive sequence; beta-globin; hemoglobin; pseudogene. SOURCE A.geoffroyi DNA, clone pSPM-psi-eta-10E. ORGANISM Ateles geoffroyi Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Platyrrhini; Cebidae; Atelinae. REFERENCE 1 (bases 1 to 7143) AUTHORS Fitch,D.H., Mainone,C., Slightom,J.L. and Goodman,M. TITLE The spider monkey pseudo-eta-globin gene and surrounding sequences: Recent or ancient insertions of LINEs and SINEs? JOURNAL Genomics 3, 237-255 (1988) STANDARD full automatic COMMENT Draft entry and computer-readable sequence for [1] kindly provided by D.H.A.Fitch, 03-AUG-1988. Two framshift mutations are located at positions 1620-1621 and 1667-1668, resulting in a premature opal termination codon at 1666-1668. FEATURES Location/Qualifiers CDS join(1606..1695,1817..2037,3368..3484) /pseudo /gene="pseudo hb-e" /codon_start=1 exon 1553..1695 /number=1 /gene="pseudo hb-e" /partial intron 1696..1816 /number=1 /gene="pseudo hb-e" exon 1817..2037 /number=2 /gene="pseudo hb-e" intron 2038..3367 /number=2 /gene="pseudo hb-e" repeat_region 2622..2631 /note="L1 LINE insertion target sequence" repeat_region 2632..3077 /note="L1 LINE repeat" repeat_region 3080..3089 /note="L1 LINE insertion target sequence" repeat_region 6554..6562 /note="Alu insertion target sequence" repeat_region 6563..6863 /note="Alu repeat" repeat_region 6870..6878 /note="Alu insertion target sequence" BASE COUNT 2188 a 1342 c 1411 g 2202 t ORIGIN 523 bp upstream of HindIII site. 1 gaatccctgt ttggctgatg gaaagatggg gcagctattc actgatatgc agggttttaa 61 atgtatgtat atgaggatat gaggtatggc aatgaaccat tctgttggga attagtttta 121 gggccattaa aggacatggc ctgaggtgtt ctctcaggcc agtccccaca actcaatata 181 aatgtgtttc ctgcatatag tcaaagctgc cacttctttt tcttcctatc attgatctct 241 gctcttaatc tcgatttcgc gtcaaactct gtttgtcact acaaatttcc ccgatgttcc 301 taagtaacac agataactgc ctctcaacta tatcaagtag actaaaatat tgtgtctcta 361 atatcagaaa ttcagcttta atatattggg ttgaactctt tgaaatttag agtctccttg 421 aagtacacat ggggatgatt tcctaaactt tgtttcttgt aaggatttat gtcaggggga 481 acacacaaac tagcatcctc aacctgtaag tatgaggaca ataagcttta aggtaagaat 541 atgaaataaa ctgttattct ctttcccagt gcaagtgtgc cctgtctatt cctgaaatgg 601 cttgtttgag aggcatgaga cgtgcagcat gtgagacacg ggcagcagcc tgtggaatat 661 tgtcggtgaa gaatgtctct gcctgattag atataaagac aagtcaaaca cagcattaga 721 ctgtaggtca agcacgtgcc agacacgaat gacttaatgc ccagcactgg ccatggattc 781 ttctatcctc ttgattgaac aaagcagcac ccttctcccc cagcactaaa acatctatat 841 gcactggcat agttttgtag atacatagaa tttgacatta attattgttc agtgattcag 901 aggaaatctc ctttgctcag ataagtacac tgaccactaa atggattaaa aaacactgaa 961 ataaaactca gttttcgcct tacttcccta gtttgtttct tattttgctt tcttccagat 1021 ggatgctgga tagaggtgtt tatttctgtt ctaaaaagga atgaactttt gtgctcaatg 1081 tagtcttaag agaactgaaa accaagaaag gatgtggctt cttccacaaa aagcctggat 1141 gaataacatg ctgtcatatt gtcacaactc ctgacccagg aactgatggc taacatattc 1201 ataattctta tccttttcag ttctaactta ttcctatttg tcagcattca ggttattagg 1261 agctggtggt gatgaagacc ttgagatata aactgcacat ggtggaggta gtggagaaaa 1321 atagacggga aagaagagaa gtttcaaatt aagtctgaac agcaaattct ccttgagagg 1381 caacccagat gctatcagaa actcgaatgt ccatcttgca aaacttctct tgcctaaacc 1441 ccacccctga agccacaact cacccttgac caatagattc atttcactgg gagaggcaaa 1501 gggctgggga ccaaagagga gaagtaaaaa gccacacatg aagcagcagt gcagacatgc 1561 ttctggctca tctgtgatca ccaagaaact cccagacctg acactgtggt gcatttcact 1621 ctgacaaaag ggctgctgcc actagcctgt ggaacaaggt taaggtgaga aggctggagg 1681 tgagattctg ggcaggtagc tactagaagc cagagcaagg tgtagaaagg cagaaagtgt 1741 tcctgaaaga gggattagcc agttgtctta catattctga ctttgcatct gctgtttgat 1801 tatgactatc ccacagtctc ctggttgtct agccatggac ctagaggtac tttgaaagtt 1861 ttggtaatct gggctctgac tgtgtaataa tggcaacccc aaagtcaagg cacatggaag 1921 aagctgctga tctccttcag aaaagctgtt atgctcttgt atgacctcaa aggcaccttt 1981 gctatgctga gtgacctgca ctgtgacaag ctacacatgg accctgagaa cttcctggtg 2041 agttctaagc acactcatgc tttcttcttt ccccttaaat attcgcacga tggctacttt 2101 tgaaagcaga ggcggctttc tcttgtgcta tgagtcagct gtgggatggt atttcagtga 2161 tgggatcgaa tttgagagtt atgttgctct aaataacatc cctaaaattt ggtggagcaa 2221 ggactacaaa tagtggaagg ccccttacca tttgatagct ctgaaaaaca catcttttaa 2281 aaaattctgg ccagaattga actgagtgtt tttggatgag ggaatgaaag ttgaggtaga 2341 gaaaataaca ccttgccttt ggtcactgaa attttctgtg aaaattaata gacacttttc 2401 tgcatagtcc tggaggttag aaaaagataa actagaacag agtaatggga agcttttaaa 2461 aagaagattg tttccctctg aatgatgatg atatgctttt gtacacatgg tacaggattt 2521 tttgttatga gtgtttgcga aaattgtatg tgtgtgataa ctggggactt atcctatacc 2581 ttactgttcc ttgaagtact attgtccact ttttaaaagg atggagtctt tttatttatt 2641 tatttattta tttatttttt attgcatttt aggtttgggg gtacatgtga agaacgtgga 2701 agattgttgc gtaggtacac acatggcagt gtgatgtgct gccttccacc ccatcaccta 2761 tatctggcat ttctccccat gctatccctc cccaactccc caccccccac tatccctccc 2821 ctttttaccc ccgacagacc ccagtgtgtg atactcccct ccctgtgtcc atgtgttccc 2881 attgttcaac acccgcctat gagtgagaac atgcggtgtt tgattttctg ttcttgtgtc 2941 agtttgctga gaatgatggt ttccatgttc atccatgtcc ctacaaagga cacgaactca 3001 tcgtttttga tggctacata atattccatg gtgtatatgt gccacatttt ccctgtccag 3061 tctatcatcg atgggcattt ggagtcttta aaaaagtgaa acaattaatc acaatgtgct 3121 gtggtagtga gttggcatag caagtaagag aaggatagga cacaatggaa ggtgcaggac 3181 tggcagtcat attgaagctg atgtctagcc cataatggtg tacttacctt tgtgagaaga 3241 agactcagag agttgctcaa actcttgtca aaaagaaaat aaatgctgta tttatttatt 3301 gcaagtccag cttgaggcct attattcact atgtaccatt tcctttttat cttcactccc 3361 tccccagctc ttaggcaacg tgatattgat ggttttggca acccacttca gcgaggagtt 3421 taccctacag atacaggctt ccaggcaaag accaacaaat gctgtggccc acaattatca 3481 ctgagcaact tgtccactgt gttcgtacct gctggtccac tatgtttgta cccatgtcct 3541 aaaagctcat ctcctttaga tggaggatgt tggggagaag agcaatatcc tgcatgcaga 3601 ttcagctcct gcatgataaa aataaaataa agaaatgtgc taagaaatat cattatatat 3661 tttttctgtc tttatgtttt atgttgattc agccaaaagg atgcaccatt tctgatggaa 3721 atgggaatgt tggagaatga gagtttaaaa atagagaaga gactttcttg caatcctgaa 3781 agataagaga taacttgtgg gtggatttag tggggtagct actcctgcga aggggaggtc 3841 atctctagaa taagacaatg tctttaaaga aagggagggg aatggaggta ctcttgaaag 3901 atgtaagagg atttttgata gtgtgtaaag atatgttagg actcaaatta aaaattctgt 3961 ataggttatt atctgtatga actcaggata tagctcattt ggtgactgta gttcacttct 4021 acttattcta aacaacatat ttttatcatt tataatgcag tgggatggga cttcctatag 4081 ctcaatcaaa ggcaaaacct tgaaattttt cttagtgtct tcaatgatta atagagaatt 4141 atctctaagc catgagaact agctgtcttg gtttttaaca gtatttcatc tgctacttct 4201 gtgacctgaa agagatttat aattccatta agctatacat tagatatata tttattttcc 4261 ttaaaggatt tttgaaagaa ctaatttaat tgatacttat aaagtcatta ttacactacc 4321 cagtaaataa tcaatctctt tgttcagctc tctgttttta taaatacaca taagttttat 4381 tgtttttagt ggtagtgatt ttattctttc tatttatctg tatacatatg tgcattcata 4441 aatatataca atttttataa ttaaaaaatt tattatcaat caatattgaa aaccactgat 4501 ttttagtgaa gacgaaagtc tgtttatgtg agtaaaagca gattaaaagg ctgagattta 4561 ggaaccaaca tgttaggtta aattgataga agagaataca gatgtttaaa ggaggcaggg 4621 tgatataaaa ttagggaaac tggatgcaga gaccagatga agcaagaaaa atagctattg 4681 tttggagcaa ataatcacta aagtttcttg catatgagag tgacataata aatagagaaa 4741 tttaggcaaa ttgattcaca tggatatata tagaactgat tagacaaagc ctaacttgga 4801 tatagtcaga ggagcttgct gtgattgtat tgaagtgatg gataaagaac tgaagttgat 4861 ggaaacaatg aaattaaata aaaaattgag taagagacca ttgtggcagt gattccacag 4921 aactggaaaa cattgtgaaa cagacagtca gagatggcag ctaaaatccc tgtctgtgaa 4981 tgaaaagaag gaaatctatt gacagaacag aaaatggcta caagcccctt gcttggatct 5041 ggcaatgaac atagccattc tgtggcaatc acatcaaact cctgtaccca agatccttag 5101 gaagtatgta gtaacctcaa actgactcaa agaaataggt tttagaggac ataatatcct 5161 ttcttctcca atttcagtaa tccaaaaacc tccttctcaa agtatttcct atatgtgtcc 5221 accccaaaga actcacctca ccttacctct tgagtgggag cacatagata ggtagtgcta 5281 ccacctaaag cttctgaaat tcctttgtcg tgtttttgag tccctactaa taacccacaa 5341 agcagaataa ataggagttg tgcatgcaca ataatcactc agttactgtc ttgcagtata 5401 catgaattaa gtacatcctt tgaataatta ctgtgttcaa gcaaccacac tttaaactct 5461 catacttgtg ctatcccctg cccttctaaa tctcattgtg tattttaaat taagagaata 5521 gggttcaatt ttctgtgtta cttattgttc atttcttgct gagcagtttt cacattcacc 5581 tttactggaa aacacataag tacacatctt gacacacagg aaaaatatac cagactaaca 5641 tgatgcatga atgcttgtgc atgtggttat ataaaatctt gtagcaatgt aaacattctc 5701 tgatacacac gtacagatgt gtgtatataa ctatgcaagt tcttatgctc catgcaacac 5761 ccatgcacac acatcccatg cacacataag aacacacact gttacagacg catacttgca 5821 tgcactgata aaattacccc agtcaatgta gggaatctgg atttctgcat ttgactctgt 5881 tagcttgtgc atgttgttta gttactctgg gtgatgtctt tccctcattt tgtcctgtct 5941 atcttatacc catactttaa gtcttaaatg tcatctcaac taagaaggta tttttttttt 6001 taattttaac tgggttgaaa actctgtata taaactctgc tacaatcatg gcctctttct 6061 tatcataata tttagcactt ttcctactaa tgtatttaat ctgctcattg tgtattccta 6121 ccactaaatt ttaacctctt ttatggtaga gacattttct tgtaaactct tatttcccta 6181 gtatttgaag ataaaaaaaa tgattaaaat atccaatagt taaatctctc ttttctacat 6241 tatgagtatt acactattcc tagagaagtt tgtttgagac ctaaactgag gaaccattgg 6301 ttcaaaaatg actatgtgat atcttagtat ttgtaggtca tgagctttct tcctctacct 6361 ctataaggct attccctcag tctttcttcc tatagtttga ttagtcaaca agtatgtgtc 6421 atgcattttt ttcacatcag aaattcgtac actaataaga catagtatca gaaatcagtt 6481 tattagttat atcagttaga gtctatcaag gaaaccacaa accattatca gttacttcaa 6541 cctataatta aatacagcta ttgcaggcgc ggtggctctt gcctgtagtc ccagaccttt 6601 gggaggccga ggtggatgga tcaagaccac gctggctaat acagtgaaac ttcgtctctt 6661 ctaaaaatac aaaaaattag ctgggtgtgg tggtgtgcgc ctatagtccc agctactcag 6721 gaagctgagg caggagaatt gcttgaacct gaaaggtgga ggttgcagtg agccaagctc 6781 aggccactgc actccaacct aggagacaga gcaagactct gtctcaaaaa aaaaaaaaaa 6841 aaaagaaaaa ggaaaaagaa aaaccccaaa ctgctgttaa ttgttggtta tgcttatatt 6901 ggaacagctg aaatttcaaa taaaggacag cacagaagtc tggatgttag caacatcaga 6961 aagcttcttc taccattagg cctagaagga cagaaggaga aaatgtttat accatcagag 7021 ttcggaacca gaggtctact ggattcagtg agatactggg ggctccttgg aaggagccaa 7081 gactgtctaa tgggagcatc aaaaatatca accataaaaa agattgtctg ctgtaggaga 7141 tcc //